i'm not sure what's happening if all the power commands are failing.
maybe the 3v3 power supply rail is a bit
weak after all these years.
in my case i have some ripples on the 3v3 rail as well.
this could be fixed by
recaping the power supply. :>
(it's making funny noises even with just the few mA more, the expansion pak needs, if i insert it ^^)
every device you add uses a few mA more and stresses the power supply
if you have some problems with the tool:
maybe it could help to replace the expansion pak with the jumper pak
or unpluging all other joypads...
the 3v3 rail starts at the power supply and goes
[power supply 3v3]->[n64]->[joypad]->[transfer pak (3v3->5v)]->[cartridge]
these are quit a few connectors and
if you want to try to
reduce the
impedance by cleaning them
these are the important points
isopropyl alcohol and a gum eraser are good tools for it
n64 side of the power supply connector

n64 side of the joypad connector

these are the more critical ones
even shaking the pak while using it could produce errors
as you can see gnd and 3v3 are split over a few pins
front of the pak pcb

back of the pak pcb

game boy carts, are transported in pockets, lying on the carpet...
there is a good chance for dust to cover the contacts and even to go over into the cartslot
for the cartslot on the tp, maybe you could use some cardboard ^^
(sandpaper isn't a good idea, think of corrosion ^^)
gb cart pcb (single sided)

happy cleaning :>