Did you remove your tabs on your snes to make it region free ? Reason i ask is because i had the same problem. Worked fine when i had the tabs; however when i removed them (Removed a good chunk, but wasn't able to sand down.), i had the same problem. I ended up testing it on my friend's SNES and a SNES in a mom and pop game store. Both work great (Ended up buying the one in the mom and pop shop and gave my old one to a friend. :p). Long story short, seems like a misalignment issue.
SIDENOTE: Probably already known; however, it freezes on a Supaboy as well. Unfortunately, this is because it can't hold enough power to run it. The solution is to keep it plugged in while playing.

Works fine on the Pokefami and it's US clone; however, the system in general is faulty (Flashcart or not.).